Greg Podgorski Ph.D.

Publications | Abstracts

• Ghaffarizadeh, A., Podgorski, G.J, Flann, N.S, (2013). Epigenetic Landscape: a New Look. Society for Mathematical Biology Annual Meeting
• Bani Baker, Q., Ghaffarizadeh, A., Kwon, S., Podgorski, G.J, Flann, N.S, (2013). An Agent-based Model of Ductal Carcinoma in situ (DCIS) and its Validation in a Tissue-engineered Model of DCIS. Institute of Biological Engineering Annual Conference
• Flann, N.S, Ghaffarizadeh, A., Podgorski, G.J, (2012). BioCellion: A high-performance computing framework for multiscale modeling and simulation of multicellular biological systems. The Society for Mathematical Biology Annual Meeting and Conference
• Flann, N.S, Mahoney, A., Smith, B., Podgorski, G.J, (2008). Evaluating Cancer Interventions by Simulating Tumor-Induced Angiogenesis, Blood Flow and Oxygen Delivery. European Conference on Mathematical and Theoretical Biology

An asterisk (*) at the end of a publication indicates that it has not been peer-reviewed.

Publications | Book Chapters

• Flann, N.S, Mohamadloun, H., Podgorski, G.J, (2012). Criticality of Spatiotemporal Dynamics in Contact Mediated Pattern Formation: Series: Lecture Notes in Computer Science, Vol. 7223 Subseries: Theoretical Computer Science and General Issues. Springer

An asterisk (*) at the end of a publication indicates that it has not been peer-reviewed.

Publications | Journal Articles

Academic Journal

• Mohamadlou, H., Podgorski, G.J, Flann, N.S, (2016). Modular Genetic Regulatory Networks Increase Organization During Pattern Formation. BioSystems, Elsevier, doi: 10.1016/j.biosystems.2016.04.004
• Ghaffarizadeh, A., Flann, N.S, Podgorski, G.J, (2014). Multistable Switches and their Role in Cellular Differentiation Networks. BMC Bioinformatics, 15:S7
• Ghaffarizadeh, A., Flann, N.S, Podgorski, G.J, (2014). Modeling and Visualizing Cell Type Switching. Computational and Mathematical Methods in Medicine, 2014:293980
• Flann, N.S, Mohamadloun, H., Podgorski, G.J, (2013). Kolmogorov Complexity of Epithelial Pattern Formation: the role of Regulatory Network Configuration.. Biosystems, 112:2, 131-138. doi: 10.1016/j.biosystems
• Mahoney, A.W, Podgorski, G.J, Flann, N.S, (2012). A Multi-Objective Optimization Based-Approach for Discovering Novel Cancer Therapies. IEEE/ACM Transactions on Computational Biology and Bioinformatics. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9:1, 169-184. doi: 10.1109/TCBB.2010.39
• Mahoney, A.W, Smith, B.G, Flann, N.S, Podgorski, G.J, (2009). Discovering novel cancer therapies: A computational modeling and search approach. Comp. Intelligence Bioinform. Comp. Biol
• Podgorski, G.J, Bansal, M., Flann, N.S, (2007). Regular Mosaic Pattern Formation: A Study of the Interplay between Lateral Inhibition, Apoptosis, and Differential Adhesion. Journal of Theoretical Biology and Medical Modelling, 4, 43.
• Weening, K.E, Verkerke-VanWijk, I., Thompson, C.R, Kessin, R.H, Podgorski, G.J, Schaap, P., (2003). Contrasting activities of the aggregative and late PDSA promoters in Dictyostelium development. Dev. Biol. , 255, 373-382.
• Brandon, M., Mahadeo, D.C, Podgorski, G.J, (2002). Gα3 and PKA represent cross-talking pathways for gene expression in Dictyostelium. Devel. Differ., 44, 457-465.
• Davis, D., Doloman, A., Podgorski, G.J, Vargis, E., Flann, N.S, Exploiting Self-Organization in Bioengineered Systems. Biotechnology and Bioengineering / Wiley, 5:27
• Baker, Q.B, Podgorski, G.J, Vargis, E., Flann, N.S, The Effect of Retinal Pigment Epithelial Cell Patch Size on VEGF Production: A Computational Study. Journal of Biological Engineering
• Ghaffarizadeh, A., Podgorski, G.J, Flann, N.S, Applying Attractor Dynamics to Infer Gene Regulatory Networks for Cellular Differentiation. BioSystems

An asterisk (*) at the end of a publication indicates that it has not been peer-reviewed.

Publications | Other

An asterisk (*) at the end of a publication indicates that it has not been peer-reviewed.